PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2592_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 213aa    MW: 23208.7 Da    PI: 9.2909
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2592_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-1369120147
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 
                                          +++WT eE+e l  +v+++G+g Wk I r        + R+  ++k++w+++
  cra_locus_2592_iso_5_len_1372_ver_3  69 KQKWTSEEEEALRAGVRKHGTGKWKNIQRDPEfshllNSRSNIDLKDKWRNL 120
                                          79************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.20864125IPR017930Myb domain
SuperFamilySSF466892.44E-1666122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-1567121IPR009057Homeodomain-like
SMARTSM007171.9E-868123IPR001005SANT/Myb domain
CDDcd116604.16E-2170121No hitNo description
PfamPF139213.3E-972128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
XGRGGNYKNE LEPTQTNAFA WTLLCDTKPS EERSRVLSFN GGSGRNCSGD FLSAGFRSVF  60
DRRDMGNPKQ KWTSEEEEAL RAGVRKHGTG KWKNIQRDPE FSHLLNSRSN IDLKDKWRNL  120
TVSASNGTGS RDKSKGQKLK LLTDAPAAPL PSSQTALTPS IPISHDVSVD IADDGSKGSD  180
AKAASRXXXX XXXCVLWNHS VTVESSNGPG LID
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757029.17e-45PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_016464151.17e-45PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A068U3Q43e-52A0A068U3Q4_COFCA; Uncharacterized protein
STRINGPOPTR_0006s14940.19e-37(Populus trichocarpa)